Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 CRYGEP-201ENST00000412192 528 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 MIR4321-201ENST00000592276 80 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 LINC02228-204ENST00000642115 2962 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AC073439.1-201ENST00000624121 1774 ntBASIC17.37■□□□□ 0.37
CCDC42Q96M95 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC42Q96M95 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC42Q96M95 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 AC099063.4-201ENST00000641099 1602 ntBASIC17.36■□□□□ 0.37
CCDC42Q96M95 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 IGLL3P-201ENST00000412472 434 ntBASIC17.36■□□□□ 0.37
CCDC42Q96M95 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.36■□□□□ 0.37
CCDC42Q96M95 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC42Q96M95 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 AC105250.1-201ENST00000509378 2057 ntBASIC17.35■□□□□ 0.37
CCDC42Q96M95 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 AC096734.2-201ENST00000562054 433 ntBASIC17.35■□□□□ 0.37
CCDC42Q96M95 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC42Q96M95 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC42Q96M95 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms