Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC88AQ3V6T2 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 SDCCAG3P2-201ENST00000326105 1023 ntBASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 HOMER2P2-201ENST00000451621 847 ntBASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 AC138951.2-201ENST00000623455 1161 ntBASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC88AQ3V6T2 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 C2orf27AP3-201ENST00000434123 579 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AL096828.3-201ENST00000615354 462 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AL354718.3-201ENST00000616414 581 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 CR382287.1-201ENST00000623954 586 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 LTB4R2-202ENST00000528054 3092 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AC006449.6-201ENST00000612330 2296 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AC106820.2-201ENST00000563775 3264 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 MIR33B-201ENST00000385104 96 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AC243562.2-201ENST00000561247 970 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 AL691432.1-201ENST00000596308 1422 ntBASIC19.31■□□□□ 0.68
CCDC88AQ3V6T2 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 Z93015.1-201ENST00000451718 390 ntBASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CCDC88AQ3V6T2 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms