Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.22■□□□□ 0.35
VCPP55072 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.22■□□□□ 0.35
VCPP55072 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 AC022210.1-201ENST00000449856 793 ntBASIC17.22■□□□□ 0.35
VCPP55072 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 AC092552.1-201ENST00000547243 906 ntBASIC17.22■□□□□ 0.35
VCPP55072 RAB43P1-201ENST00000561790 589 ntBASIC17.22■□□□□ 0.35
VCPP55072 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 AL133338.1-201ENST00000565695 1517 ntBASIC17.21■□□□□ 0.35
VCPP55072 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VCPP55072 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.21■□□□□ 0.35
VCPP55072 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.21■□□□□ 0.35
VCPP55072 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.21■□□□□ 0.35
VCPP55072 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.21■□□□□ 0.35
VCPP55072 RN7SL752P-201ENST00000463779 287 ntBASIC17.21■□□□□ 0.35
VCPP55072 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.21■□□□□ 0.35
VCPP55072 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.21■□□□□ 0.35
VCPP55072 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 SPTSSB-204ENST00000617024 1292 ntBASIC17.21■□□□□ 0.35
VCPP55072 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.21■□□□□ 0.35
VCPP55072 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.21■□□□□ 0.35
VCPP55072 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.21■□□□□ 0.35
VCPP55072 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VCPP55072 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.21■□□□□ 0.35
VCPP55072 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.21■□□□□ 0.35
VCPP55072 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.21■□□□□ 0.34
VCPP55072 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VCPP55072 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.21■□□□□ 0.34
VCPP55072 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
VCPP55072 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.21■□□□□ 0.34
VCPP55072 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.21■□□□□ 0.34
VCPP55072 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 GPAA1P2-202ENST00000606848 1787 ntBASIC17.2■□□□□ 0.34
VCPP55072 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VCPP55072 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
VCPP55072 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.2■□□□□ 0.34
VCPP55072 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VCPP55072 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms