Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.07■□□□□ 0.16
XRCC1P18887 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.07■□□□□ 0.16
XRCC1P18887 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
XRCC1P18887 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
XRCC1P18887 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.07■□□□□ 0.16
XRCC1P18887 SPDYE7P-202ENST00000420373 878 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 CNN2P2-201ENST00000443536 909 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
XRCC1P18887 FAM86GP-201ENST00000448322 971 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.07■□□□□ 0.16
XRCC1P18887 CNN2P3-201ENST00000450201 906 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.07■□□□□ 0.16
XRCC1P18887 PRYP6-201ENST00000514804 343 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.07■□□□□ 0.16
XRCC1P18887 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.07■□□□□ 0.16
XRCC1P18887 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
XRCC1P18887 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.07■□□□□ 0.16
XRCC1P18887 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 AC020765.3-201ENST00000613051 740 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 AC106028.4-201ENST00000614509 607 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 AL136317.3-201ENST00000618497 906 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 Z92544.3-201ENST00000624747 417 ntBASIC16.07■□□□□ 0.16
XRCC1P18887 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.07■□□□□ 0.16
XRCC1P18887 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
XRCC1P18887 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
XRCC1P18887 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.07■□□□□ 0.16
XRCC1P18887 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
XRCC1P18887 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 AC073439.1-201ENST00000624121 1774 ntBASIC16.06■□□□□ 0.16
XRCC1P18887 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.06■□□□□ 0.16
XRCC1P18887 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
XRCC1P18887 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 HMGN1P19-201ENST00000436976 333 ntBASIC16.06■□□□□ 0.16
XRCC1P18887 SPDYE14P-201ENST00000442619 822 ntBASIC16.06■□□□□ 0.16
XRCC1P18887 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.06■□□□□ 0.16
XRCC1P18887 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
XRCC1P18887 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.06■□□□□ 0.16
XRCC1P18887 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.06■□□□□ 0.16
XRCC1P18887 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms