Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
APOEP02649 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.87■□□□□ 0.29
APOEP02649 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.87■□□□□ 0.29
APOEP02649 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
APOEP02649 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
APOEP02649 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 KLF2P3-201ENST00000451977 1087 ntBASIC16.87■□□□□ 0.29
APOEP02649 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 RFPL4AP1-201ENST00000530883 850 ntBASIC16.87■□□□□ 0.29
APOEP02649 AC061975.2-201ENST00000581722 295 ntBASIC16.87■□□□□ 0.29
APOEP02649 MIR4321-201ENST00000592276 80 ntBASIC16.87■□□□□ 0.29
APOEP02649 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 AC007967.4-201ENST00000614700 386 ntBASIC16.87■□□□□ 0.29
APOEP02649 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.87■□□□□ 0.29
APOEP02649 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.87■□□□□ 0.29
APOEP02649 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.87■□□□□ 0.29
APOEP02649 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.87■□□□□ 0.29
APOEP02649 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
APOEP02649 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 AC126755.1-201ENST00000525846 6405 ntBASIC16.87■□□□□ 0.29
APOEP02649 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.87■□□□□ 0.29
APOEP02649 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
APOEP02649 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.86■□□□□ 0.29
APOEP02649 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 AC107890.1-201ENST00000422478 521 ntBASIC16.86■□□□□ 0.29
APOEP02649 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.86■□□□□ 0.29
APOEP02649 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.86■□□□□ 0.29
APOEP02649 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.86■□□□□ 0.29
APOEP02649 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.86■□□□□ 0.29
APOEP02649 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.86■□□□□ 0.29
APOEP02649 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.86■□□□□ 0.29
APOEP02649 AC027796.2-201ENST00000575326 344 ntBASIC16.86■□□□□ 0.29
APOEP02649 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.86■□□□□ 0.29
APOEP02649 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.86■□□□□ 0.29
APOEP02649 AC026979.3-201ENST00000607315 403 ntBASIC16.86■□□□□ 0.29
APOEP02649 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
APOEP02649 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.86■□□□□ 0.29
APOEP02649 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
APOEP02649 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
APOEP02649 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
APOEP02649 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.85■□□□□ 0.29
APOEP02649 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.85■□□□□ 0.29
APOEP02649 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.85■□□□□ 0.29
APOEP02649 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
APOEP02649 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
APOEP02649 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
APOEP02649 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
APOEP02649 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.85■□□□□ 0.29
APOEP02649 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.85■□□□□ 0.29
APOEP02649 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.85■□□□□ 0.29
APOEP02649 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms