Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS9D1Q9Y2B5 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SPCS2P4-201ENST00000436160 681 ntBASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 TIMM8BP1-201ENST00000452384 211 ntBASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 AC005829.1-201ENST00000570002 483 ntBASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 AC055717.3-201ENST00000622967 595 ntBASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 ELL2P1-201ENST00000413990 1906 ntBASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS9D1Q9Y2B5 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 FOXO1B-201ENST00000504678 1527 ntBASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 AC010422.1-201ENST00000414548 543 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 KRT8P48-201ENST00000515599 1220 ntBASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 AC026979.3-201ENST00000607315 403 ntBASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 AC084121.4-201ENST00000641598 221 ntBASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 AF228730.8-201ENST00000642140 221 ntBASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VPS9D1Q9Y2B5 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 AC022762.2-201ENST00000600308 1353 ntBASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS9D1Q9Y2B5 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms