Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.11■□□□□ 0.33
CISHQ9NSE2 PMS2P2-201ENST00000425039 1128 ntBASIC17.11■□□□□ 0.33
CISHQ9NSE2 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 SPDYE12P-201ENST00000618416 771 ntBASIC17.11■□□□□ 0.33
CISHQ9NSE2 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 KRT8P12-202ENST00000472924 1397 ntBASIC17.11■□□□□ 0.33
CISHQ9NSE2 AP005117.1-202ENST00000581724 1908 ntBASIC17.11■□□□□ 0.33
CISHQ9NSE2 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CISHQ9NSE2 PRAL-201ENST00000624952 3286 ntBASIC17.11■□□□□ 0.33
CISHQ9NSE2 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.11■□□□□ 0.33
CISHQ9NSE2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 RPL37AP1-201ENST00000412502 279 ntBASIC17.1■□□□□ 0.33
CISHQ9NSE2 AL080243.2-201ENST00000418783 582 ntBASIC17.1■□□□□ 0.33
CISHQ9NSE2 HLA-V-204ENST00000476601 1289 ntBASIC17.1■□□□□ 0.33
CISHQ9NSE2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 AC069120.2-201ENST00000524091 540 ntBASIC17.1■□□□□ 0.33
CISHQ9NSE2 DUX4L27-201ENST00000554796 1261 ntBASIC17.1■□□□□ 0.33
CISHQ9NSE2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 AC106028.4-201ENST00000614509 607 ntBASIC17.1■□□□□ 0.33
CISHQ9NSE2 AL138828.2-201ENST00000615812 383 ntBASIC17.1■□□□□ 0.33
CISHQ9NSE2 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CISHQ9NSE2 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CISHQ9NSE2 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CISHQ9NSE2 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.09■□□□□ 0.33
CISHQ9NSE2 FO538757.1-201ENST00000623083 1397 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms