Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 AC073439.1-201ENST00000624121 1774 ntBASIC15.96■□□□□ 0.15
SSU72Q9NP77 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SSU72Q9NP77 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.96■□□□□ 0.15
SSU72Q9NP77 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SSU72Q9NP77 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 OR7E14P-202ENST00000530490 1290 ntBASIC15.96■□□□□ 0.15
SSU72Q9NP77 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SSU72Q9NP77 MIR4313-201ENST00000580760 101 ntBASIC15.96■□□□□ 0.15
SSU72Q9NP77 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC15.96■□□□□ 0.15
SSU72Q9NP77 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SSU72Q9NP77 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 LINC00552-201ENST00000625151 2579 ntBASIC15.96■□□□□ 0.15
SSU72Q9NP77 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
SSU72Q9NP77 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SSU72Q9NP77 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SSU72Q9NP77 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SSU72Q9NP77 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.96■□□□□ 0.14
SSU72Q9NP77 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
SSU72Q9NP77 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.14
SSU72Q9NP77 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SSU72Q9NP77 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
SSU72Q9NP77 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.96■□□□□ 0.14
SSU72Q9NP77 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.96■□□□□ 0.14
SSU72Q9NP77 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 AL356488.2-201ENST00000602755 427 ntBASIC15.95■□□□□ 0.14
SSU72Q9NP77 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 AC148477.4-201ENST00000613430 1793 ntBASIC15.95■□□□□ 0.14
SSU72Q9NP77 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SSU72Q9NP77 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SSU72Q9NP77 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 AC008735.5-201ENST00000623544 497 ntBASIC15.94■□□□□ 0.14
SSU72Q9NP77 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.94■□□□□ 0.14
SSU72Q9NP77 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SSU72Q9NP77 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms