Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC20.43■□□□□ 0.86
CHMP4AQ9BY43 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 LINC02084-201ENST00000606069 1096 ntBASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHMP4AQ9BY43 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 MEIS3P1-201ENST00000495167 958 ntBASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 AC099568.2-201ENST00000609194 695 ntBASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CHMP4AQ9BY43 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 MIR661-201ENST00000384842 89 ntBASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AC006449.5-201ENST00000610658 2098 ntBASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.4■□□□□ 0.86
CHMP4AQ9BY43 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms