Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC006480.2-201ENST00000609770 1337 ntBASIC17.32■□□□□ 0.36
LRCH3Q96II8 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 CYP46A4P-201ENST00000414953 267 ntBASIC17.32■□□□□ 0.36
LRCH3Q96II8 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 PRKXP1-201ENST00000561423 1122 ntBASIC17.32■□□□□ 0.36
LRCH3Q96II8 AC124283.3-201ENST00000570869 594 ntBASIC17.32■□□□□ 0.36
LRCH3Q96II8 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 AC005786.4-201ENST00000623369 682 ntBASIC17.32■□□□□ 0.36
LRCH3Q96II8 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
LRCH3Q96II8 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LRCH3Q96II8 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 AL133466.1-201ENST00000447582 150 ntBASIC17.31■□□□□ 0.36
LRCH3Q96II8 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 FGFR3P5-201ENST00000564496 886 ntBASIC17.31■□□□□ 0.36
LRCH3Q96II8 AC009486.1-201ENST00000569860 813 ntBASIC17.31■□□□□ 0.36
LRCH3Q96II8 MIR3147-201ENST00000577811 66 ntBASIC17.31■□□□□ 0.36
LRCH3Q96II8 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 LINC01115-203ENST00000606068 577 ntBASIC17.31■□□□□ 0.36
LRCH3Q96II8 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 AC079336.7-201ENST00000623428 1078 ntBASIC17.31■□□□□ 0.36
LRCH3Q96II8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRCH3Q96II8 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.31■□□□□ 0.36
LRCH3Q96II8 AC018735.1-201ENST00000437208 1502 ntBASIC17.31■□□□□ 0.36
LRCH3Q96II8 KRT8P49-201ENST00000604166 1432 ntBASIC17.3■□□□□ 0.36
LRCH3Q96II8 USE1-206ENST00000595101 1776 ntTSL 2 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 MTX1P1-201ENST00000440904 838 ntBASIC17.3■□□□□ 0.36
LRCH3Q96II8 FAM86LP-201ENST00000478302 853 ntBASIC17.3■□□□□ 0.36
LRCH3Q96II8 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 GNRHR2-203ENST00000581100 1187 ntBASIC17.3■□□□□ 0.36
LRCH3Q96II8 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 AC148477.9-201ENST00000623974 539 ntBASIC17.3■□□□□ 0.36
LRCH3Q96II8 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 TNRC18P3-201ENST00000441896 2691 ntBASIC17.3■□□□□ 0.36
LRCH3Q96II8 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
LRCH3Q96II8 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
LRCH3Q96II8 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 SERF2-206ENST00000409291 807 ntTSL 3 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 AC134915.1-201ENST00000426461 574 ntBASIC17.29■□□□□ 0.36
LRCH3Q96II8 C2orf27AP3-201ENST00000434123 579 ntBASIC17.29■□□□□ 0.36
LRCH3Q96II8 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 EEF1DP6-201ENST00000449232 372 ntBASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms