Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 KRT17P8-201ENST00000540749 863 ntBASIC15.6■□□□□ 0.09
LMX1AQ8TE12 RAB43P1-201ENST00000561790 589 ntBASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 TMEM261P1-201ENST00000604899 340 ntBASIC15.6■□□□□ 0.09
LMX1AQ8TE12 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 AL033527.5-201ENST00000641382 801 ntBASIC15.6■□□□□ 0.09
LMX1AQ8TE12 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 FLJ38576-201ENST00000623820 2459 ntBASIC15.6■□□□□ 0.09
LMX1AQ8TE12 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
LMX1AQ8TE12 CDC14C-201ENST00000428251 1719 ntBASIC15.6■□□□□ 0.09
LMX1AQ8TE12 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.59■□□□□ 0.09
LMX1AQ8TE12 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 EEF1DP4-201ENST00000446006 880 ntBASIC15.59■□□□□ 0.09
LMX1AQ8TE12 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 AC079328.2-201ENST00000561241 3354 ntBASIC15.59■□□□□ 0.09
LMX1AQ8TE12 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
LMX1AQ8TE12 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1AQ8TE12 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1AQ8TE12 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.58■□□□□ 0.09
LMX1AQ8TE12 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1AQ8TE12 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
LMX1AQ8TE12 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1AQ8TE12 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
LMX1AQ8TE12 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 TARDBPP1-201ENST00000442013 1203 ntBASIC15.58■□□□□ 0.08
LMX1AQ8TE12 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 ACA64.2-201ENST00000459014 129 ntBASIC15.58■□□□□ 0.08
LMX1AQ8TE12 RN7SL399P-201ENST00000471648 279 ntBASIC15.58■□□□□ 0.08
LMX1AQ8TE12 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 AC036164.1-201ENST00000570544 333 ntBASIC15.58■□□□□ 0.08
LMX1AQ8TE12 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 ME2P1-201ENST00000426028 1970 ntBASIC15.58■□□□□ 0.08
LMX1AQ8TE12 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
LMX1AQ8TE12 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1AQ8TE12 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms