Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 AC004967.1-201ENST00000453589 447 ntBASIC14.3□□□□□ -0.12
SKA3Q8IX90 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.3□□□□□ -0.12
SKA3Q8IX90 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
SKA3Q8IX90 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 AC254562.1-201ENST00000417586 456 ntBASIC14.29□□□□□ -0.12
SKA3Q8IX90 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SLC25A39P2-201ENST00000537614 270 ntBASIC14.29□□□□□ -0.12
SKA3Q8IX90 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 AC093520.2-201ENST00000561830 333 ntBASIC14.29□□□□□ -0.12
SKA3Q8IX90 AC004835.2-201ENST00000603762 682 ntBASIC14.29□□□□□ -0.12
SKA3Q8IX90 AC084121.4-201ENST00000641598 221 ntBASIC14.29□□□□□ -0.12
SKA3Q8IX90 AF228730.8-201ENST00000642140 221 ntBASIC14.29□□□□□ -0.12
SKA3Q8IX90 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.29□□□□□ -0.12
SKA3Q8IX90 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
SKA3Q8IX90 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
SKA3Q8IX90 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.28□□□□□ -0.12
SKA3Q8IX90 AL627223.1-201ENST00000416693 442 ntBASIC14.28□□□□□ -0.12
SKA3Q8IX90 RPS8P6-201ENST00000426177 609 ntBASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms