Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.82□□□□□ -0.2
ABCA4P78363 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.82□□□□□ -0.2
ABCA4P78363 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.82□□□□□ -0.2
ABCA4P78363 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.82□□□□□ -0.2
ABCA4P78363 BTNL10-201ENST00000595971 695 ntBASIC13.82□□□□□ -0.2
ABCA4P78363 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.82□□□□□ -0.2
ABCA4P78363 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
ABCA4P78363 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
ABCA4P78363 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 AC018665.1-201ENST00000622927 1362 ntBASIC13.82□□□□□ -0.2
ABCA4P78363 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
ABCA4P78363 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.82□□□□□ -0.2
ABCA4P78363 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
ABCA4P78363 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.81□□□□□ -0.2
ABCA4P78363 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.81□□□□□ -0.2
ABCA4P78363 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.81□□□□□ -0.2
ABCA4P78363 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.81□□□□□ -0.2
ABCA4P78363 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.81□□□□□ -0.2
ABCA4P78363 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
ABCA4P78363 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.81□□□□□ -0.2
ABCA4P78363 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.81□□□□□ -0.2
ABCA4P78363 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.81□□□□□ -0.2
ABCA4P78363 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.81□□□□□ -0.2
ABCA4P78363 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
ABCA4P78363 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
ABCA4P78363 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.81□□□□□ -0.2
ABCA4P78363 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.81□□□□□ -0.2
ABCA4P78363 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC13.81□□□□□ -0.2
ABCA4P78363 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 LINC01115-203ENST00000606068 577 ntBASIC13.81□□□□□ -0.2
ABCA4P78363 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
ABCA4P78363 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.81□□□□□ -0.2
ABCA4P78363 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
ABCA4P78363 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.8□□□□□ -0.2
ABCA4P78363 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.8□□□□□ -0.2
ABCA4P78363 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.8□□□□□ -0.2
ABCA4P78363 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
ABCA4P78363 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.8□□□□□ -0.2
ABCA4P78363 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.8□□□□□ -0.2
ABCA4P78363 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC13.8□□□□□ -0.2
ABCA4P78363 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.8□□□□□ -0.2
ABCA4P78363 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.8□□□□□ -0.2
ABCA4P78363 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
ABCA4P78363 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
ABCA4P78363 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
ABCA4P78363 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
ABCA4P78363 KRT8P22-201ENST00000562317 1415 ntBASIC13.8□□□□□ -0.2
ABCA4P78363 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms