Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VCPP55072 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VCPP55072 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
VCPP55072 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VCPP55072 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VCPP55072 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.24■□□□□ 0.35
VCPP55072 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.24■□□□□ 0.35
VCPP55072 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 DGCR5-201ENST00000399539 862 ntBASIC17.24■□□□□ 0.35
VCPP55072 AL512384.1-201ENST00000406683 331 ntBASIC17.24■□□□□ 0.35
VCPP55072 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.24■□□□□ 0.35
VCPP55072 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.24■□□□□ 0.35
VCPP55072 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.24■□□□□ 0.35
VCPP55072 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.24■□□□□ 0.35
VCPP55072 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.24■□□□□ 0.35
VCPP55072 AL033527.4-201ENST00000641026 673 ntBASIC17.24■□□□□ 0.35
VCPP55072 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.24■□□□□ 0.35
VCPP55072 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VCPP55072 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.24■□□□□ 0.35
VCPP55072 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
VCPP55072 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.24■□□□□ 0.35
VCPP55072 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VCPP55072 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
VCPP55072 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VCPP55072 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VCPP55072 AL596087.1-201ENST00000400979 1969 ntBASIC17.23■□□□□ 0.35
VCPP55072 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
VCPP55072 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.23■□□□□ 0.35
VCPP55072 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.23■□□□□ 0.35
VCPP55072 KRT17P8-201ENST00000540749 863 ntBASIC17.23■□□□□ 0.35
VCPP55072 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.23■□□□□ 0.35
VCPP55072 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.23■□□□□ 0.35
VCPP55072 AP000842.3-202ENST00000569238 1080 ntBASIC17.23■□□□□ 0.35
VCPP55072 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.23■□□□□ 0.35
VCPP55072 AL138828.2-201ENST00000615812 383 ntBASIC17.23■□□□□ 0.35
VCPP55072 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.23■□□□□ 0.35
VCPP55072 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
VCPP55072 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 AL365203.3-201ENST00000609742 2057 ntBASIC17.23■□□□□ 0.35
VCPP55072 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.23■□□□□ 0.35
VCPP55072 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VCPP55072 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.22■□□□□ 0.35
VCPP55072 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
VCPP55072 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VCPP55072 WASH6P-202ENST00000359512 1437 ntBASIC17.22■□□□□ 0.35
VCPP55072 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms