Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MTHFR-217ENST00000641820 1569 ntBASIC13.23□□□□□ -0.29
CDX1P47902 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CDX1P47902 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.23□□□□□ -0.29
CDX1P47902 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CDX1P47902 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CDX1P47902 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.22□□□□□ -0.29
CDX1P47902 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
CDX1P47902 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CDX1P47902 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
CDX1P47902 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.22□□□□□ -0.29
CDX1P47902 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.22□□□□□ -0.29
CDX1P47902 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 AC139530.3-201ENST00000620344 690 ntBASIC13.22□□□□□ -0.29
CDX1P47902 AC010507.1-201ENST00000633895 436 ntBASIC13.22□□□□□ -0.29
CDX1P47902 EGFEM1P-202ENST00000431685 1563 ntBASIC13.22□□□□□ -0.29
CDX1P47902 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC13.22□□□□□ -0.29
CDX1P47902 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CDX1P47902 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.22□□□□□ -0.29
CDX1P47902 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC13.22□□□□□ -0.29
CDX1P47902 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.22□□□□□ -0.29
CDX1P47902 AC093525.9-201ENST00000624961 1746 ntBASIC13.22□□□□□ -0.29
CDX1P47902 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CDX1P47902 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 HNRNPRP1-201ENST00000453465 1695 ntBASIC13.21□□□□□ -0.29
CDX1P47902 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CDX1P47902 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.21□□□□□ -0.29
CDX1P47902 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CDX1P47902 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 RPSAP43-201ENST00000402237 625 ntBASIC13.21□□□□□ -0.29
CDX1P47902 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.21□□□□□ -0.29
CDX1P47902 SMN2-210ENST00000511812 867 ntTSL 2 BASIC13.21□□□□□ -0.29
CDX1P47902 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.21□□□□□ -0.29
CDX1P47902 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC13.21□□□□□ -0.29
CDX1P47902 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.21□□□□□ -0.29
CDX1P47902 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.21□□□□□ -0.29
CDX1P47902 AC018845.2-201ENST00000568326 409 ntBASIC13.21□□□□□ -0.29
CDX1P47902 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.21□□□□□ -0.29
CDX1P47902 AC004877.2-201ENST00000623941 599 ntBASIC13.21□□□□□ -0.29
CDX1P47902 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC13.21□□□□□ -0.29
CDX1P47902 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CDX1P47902 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CDX1P47902 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.21□□□□□ -0.29
CDX1P47902 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.21□□□□□ -0.3
CDX1P47902 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.3
CDX1P47902 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms