Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
NKX2-1P43699 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC13.24□□□□□ -0.29
NKX2-1P43699 AL022326.1-202ENST00000641533 845 ntBASIC13.24□□□□□ -0.29
NKX2-1P43699 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-1P43699 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.24□□□□□ -0.29
NKX2-1P43699 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
NKX2-1P43699 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
NKX2-1P43699 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.23□□□□□ -0.29
NKX2-1P43699 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 PI4KAP1-204ENST00000612579 1703 ntBASIC13.23□□□□□ -0.29
NKX2-1P43699 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 HAUS4P1-201ENST00000406739 1145 ntBASIC13.23□□□□□ -0.29
NKX2-1P43699 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 IGHV3-47-201ENST00000425060 335 ntBASIC13.23□□□□□ -0.29
NKX2-1P43699 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 TOB2P1-201ENST00000469761 992 ntBASIC13.23□□□□□ -0.29
NKX2-1P43699 PTK2-216ENST00000519881 863 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX2-1P43699 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX2-1P43699 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX2-1P43699 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX2-1P43699 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC13.23□□□□□ -0.29
NKX2-1P43699 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX2-1P43699 ST20-AS1-201ENST00000560255 4223 ntBASIC13.23□□□□□ -0.29
NKX2-1P43699 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
NKX2-1P43699 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
NKX2-1P43699 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 SNX18-202ENST00000343017 3140 ntBASIC13.23□□□□□ -0.29
NKX2-1P43699 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.23□□□□□ -0.29
NKX2-1P43699 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC13.23□□□□□ -0.29
NKX2-1P43699 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
NKX2-1P43699 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.23□□□□□ -0.29
NKX2-1P43699 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.22□□□□□ -0.29
NKX2-1P43699 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
NKX2-1P43699 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
NKX2-1P43699 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
NKX2-1P43699 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms