Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.34■□□□□ 0.53
SMARCA1P28370 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.34■□□□□ 0.53
SMARCA1P28370 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SMARCA1P28370 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMARCA1P28370 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SMARCA1P28370 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMARCA1P28370 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMARCA1P28370 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.33■□□□□ 0.53
SMARCA1P28370 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMARCA1P28370 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
SMARCA1P28370 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SMARCA1P28370 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
SMARCA1P28370 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.33■□□□□ 0.52
SMARCA1P28370 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.33■□□□□ 0.52
SMARCA1P28370 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.33■□□□□ 0.52
SMARCA1P28370 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SMARCA1P28370 SERBP1P5-201ENST00000510079 1181 ntBASIC18.33■□□□□ 0.52
SMARCA1P28370 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.33■□□□□ 0.52
SMARCA1P28370 MIR3197-201ENST00000582241 73 ntBASIC18.33■□□□□ 0.52
SMARCA1P28370 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMARCA1P28370 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.33■□□□□ 0.52
SMARCA1P28370 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.33■□□□□ 0.52
SMARCA1P28370 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMARCA1P28370 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMARCA1P28370 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.33■□□□□ 0.52
SMARCA1P28370 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
SMARCA1P28370 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SMARCA1P28370 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.33■□□□□ 0.52
SMARCA1P28370 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 AC010491.1-201ENST00000563101 2797 ntBASIC18.32■□□□□ 0.52
SMARCA1P28370 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.32■□□□□ 0.52
SMARCA1P28370 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.32■□□□□ 0.52
SMARCA1P28370 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
SMARCA1P28370 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.32■□□□□ 0.52
SMARCA1P28370 AC015922.1-201ENST00000421102 1152 ntBASIC18.32■□□□□ 0.52
SMARCA1P28370 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.32■□□□□ 0.52
SMARCA1P28370 MEIS3P1-201ENST00000495167 958 ntBASIC18.32■□□□□ 0.52
SMARCA1P28370 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 TIMM17BP1-201ENST00000545713 516 ntBASIC18.32■□□□□ 0.52
SMARCA1P28370 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.32■□□□□ 0.52
SMARCA1P28370 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SMARCA1P28370 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.32■□□□□ 0.52
SMARCA1P28370 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
SMARCA1P28370 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.32■□□□□ 0.52
SMARCA1P28370 AC022188.1-201ENST00000620960 1664 ntBASIC18.31■□□□□ 0.52
SMARCA1P28370 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMARCA1P28370 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
SMARCA1P28370 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMARCA1P28370 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SMARCA1P28370 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SMARCA1P28370 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SMARCA1P28370 AC079328.2-201ENST00000561241 3354 ntBASIC18.31■□□□□ 0.52
SMARCA1P28370 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms