Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DMBP28068 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DMBP28068 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
HLA-DMBP28068 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HLA-DMBP28068 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AC092850.2-201ENST00000623821 2697 ntBASIC12.32□□□□□ -0.44
HLA-DMBP28068 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 HCG4B-203ENST00000450128 991 ntBASIC12.32□□□□□ -0.44
HLA-DMBP28068 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DMBP28068 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DMBP28068 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.31□□□□□ -0.44
HLA-DMBP28068 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 MIR1233-2-201ENST00000408138 82 ntBASIC12.31□□□□□ -0.44
HLA-DMBP28068 MIR1233-1-201ENST00000408722 82 ntBASIC12.31□□□□□ -0.44
HLA-DMBP28068 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 PMS2P4-201ENST00000412466 1052 ntBASIC12.31□□□□□ -0.44
HLA-DMBP28068 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 RPL28-209ENST00000560055 670 ntTSL 3 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 CD7-202ENST00000578509 925 ntTSL 3 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 AC067930.6-201ENST00000623257 4947 ntBASIC12.31□□□□□ -0.44
HLA-DMBP28068 PPT1-215ENST00000641471 2368 ntBASIC12.31□□□□□ -0.44
HLA-DMBP28068 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
HLA-DMBP28068 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.31□□□□□ -0.44
HLA-DMBP28068 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms