Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC12.54□□□□□ -0.4
CXCL1P09341 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 AL021920.2-201ENST00000624828 1351 ntBASIC12.54□□□□□ -0.4
CXCL1P09341 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 HAL-202ENST00000538703 2637 ntTSL 2 BASIC12.54□□□□□ -0.4
CXCL1P09341 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CXCL1P09341 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CXCL1P09341 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 LGALS8-AS1-201ENST00000487567 1457 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC12.53□□□□□ -0.4
CXCL1P09341 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 MIR600HG-201ENST00000449175 5984 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 AC090616.6-203ENST00000579186 1945 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 Z83836.1-201ENST00000624605 1642 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 KLF4P1-201ENST00000412782 1185 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 ATP5G1P1-201ENST00000448724 379 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC12.53□□□□□ -0.4
CXCL1P09341 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC12.53□□□□□ -0.4
CXCL1P09341 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 CD320-202ENST00000537716 1119 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
CXCL1P09341 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 AC073912.3-201ENST00000624414 853 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CXCL1P09341 OR2I1P-209ENST00000641730 5365 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
CXCL1P09341 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 AC092127.1-201ENST00000567093 3455 ntBASIC12.53□□□□□ -0.4
CXCL1P09341 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
CXCL1P09341 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.53□□□□□ -0.4
CXCL1P09341 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CXCL1P09341 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CXCL1P09341 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CXCL1P09341 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
CXCL1P09341 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CXCL1P09341 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CXCL1P09341 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.52□□□□□ -0.4
CXCL1P09341 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.52□□□□□ -0.41
CXCL1P09341 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC12.52□□□□□ -0.41
CXCL1P09341 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CXCL1P09341 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms