Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 TK1-203ENST00000588734 1681 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A1P02462 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC19.29■□□□□ 0.68
COL4A1P02462 RPL13AP25-201ENST00000484130 612 ntBASIC19.29■□□□□ 0.68
COL4A1P02462 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC19.29■□□□□ 0.68
COL4A1P02462 DUX4L45-201ENST00000566406 1057 ntBASIC19.29■□□□□ 0.68
COL4A1P02462 RHOXF1P1-202ENST00000635473 501 ntBASIC19.29■□□□□ 0.68
COL4A1P02462 PCDHA14-201ENST00000506751 2298 ntBASIC19.29■□□□□ 0.68
COL4A1P02462 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL4A1P02462 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.29■□□□□ 0.68
COL4A1P02462 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL4A1P02462 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL4A1P02462 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL4A1P02462 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL4A1P02462 MIR1247-201ENST00000408206 136 ntBASIC19.28■□□□□ 0.68
COL4A1P02462 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.28■□□□□ 0.68
COL4A1P02462 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
COL4A1P02462 HNRNPA1P48-202ENST00000565308 961 ntBASIC19.28■□□□□ 0.68
COL4A1P02462 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.28■□□□□ 0.68
COL4A1P02462 AC244093.1-201ENST00000610837 814 ntBASIC19.28■□□□□ 0.68
COL4A1P02462 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A1P02462 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL4A1P02462 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A1P02462 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.28■□□□□ 0.68
COL4A1P02462 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL4A1P02462 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A1P02462 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A1P02462 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC19.27■□□□□ 0.68
COL4A1P02462 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.27■□□□□ 0.68
COL4A1P02462 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A1P02462 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A1P02462 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A1P02462 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A1P02462 AC078819.1-201ENST00000547454 765 ntBASIC19.27■□□□□ 0.68
COL4A1P02462 AC012085.1-201ENST00000548270 765 ntBASIC19.27■□□□□ 0.68
COL4A1P02462 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A1P02462 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A1P02462 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.27■□□□□ 0.68
COL4A1P02462 ABBA01031663.1-201ENST00000635630 790 ntBASIC19.27■□□□□ 0.68
COL4A1P02462 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A1P02462 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.27■□□□□ 0.68
COL4A1P02462 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.27■□□□□ 0.68
COL4A1P02462 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.27■□□□□ 0.68
COL4A1P02462 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL4A1P02462 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.27■□□□□ 0.67
COL4A1P02462 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A1P02462 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A1P02462 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A1P02462 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A1P02462 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.27■□□□□ 0.67
COL4A1P02462 FAM21FP-201ENST00000426241 1131 ntBASIC19.27■□□□□ 0.67
COL4A1P02462 AC016694.1-201ENST00000434179 700 ntBASIC19.27■□□□□ 0.67
COL4A1P02462 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A1P02462 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC19.27■□□□□ 0.67
COL4A1P02462 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.27■□□□□ 0.67
COL4A1P02462 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A1P02462 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.27■□□□□ 0.67
COL4A1P02462 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A1P02462 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A1P02462 RN7SL219P-201ENST00000582872 296 ntBASIC19.27■□□□□ 0.67
COL4A1P02462 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.27■□□□□ 0.67
COL4A1P02462 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.27■□□□□ 0.67
COL4A1P02462 PFAS-212ENST00000625942 396 ntTSL 5 BASIC19.27■□□□□ 0.67
COL4A1P02462 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL4A1P02462 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
COL4A1P02462 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.67
COL4A1P02462 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A1P02462 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL4A1P02462 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A1P02462 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.26■□□□□ 0.67
COL4A1P02462 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.26■□□□□ 0.67
COL4A1P02462 EMC4-209ENST00000559421 497 ntTSL 2 BASIC19.26■□□□□ 0.67
COL4A1P02462 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL4A1P02462 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL4A1P02462 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
COL4A1P02462 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL4A1P02462 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC19.26■□□□□ 0.67
COL4A1P02462 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms