Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.7■□□□□ 0.58
CDKL5O76039 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.7■□□□□ 0.58
CDKL5O76039 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.7■□□□□ 0.58
CDKL5O76039 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.7■□□□□ 0.58
CDKL5O76039 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CDKL5O76039 AC093520.2-201ENST00000561830 333 ntBASIC18.7■□□□□ 0.58
CDKL5O76039 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.7■□□□□ 0.58
CDKL5O76039 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.7■□□□□ 0.58
CDKL5O76039 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.7■□□□□ 0.58
CDKL5O76039 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDKL5O76039 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CDKL5O76039 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.7■□□□□ 0.58
CDKL5O76039 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.7■□□□□ 0.58
CDKL5O76039 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDKL5O76039 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CDKL5O76039 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 BNIP3P1-202ENST00000550043 1585 ntBASIC18.69■□□□□ 0.58
CDKL5O76039 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CDKL5O76039 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.69■□□□□ 0.58
CDKL5O76039 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 AC254562.1-201ENST00000417586 456 ntBASIC18.69■□□□□ 0.58
CDKL5O76039 FAM58DP-201ENST00000428076 619 ntBASIC18.69■□□□□ 0.58
CDKL5O76039 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.69■□□□□ 0.58
CDKL5O76039 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.69■□□□□ 0.58
CDKL5O76039 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.69■□□□□ 0.58
CDKL5O76039 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.69■□□□□ 0.58
CDKL5O76039 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.69■□□□□ 0.58
CDKL5O76039 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.69■□□□□ 0.58
CDKL5O76039 AC009093.7-201ENST00000623853 1223 ntBASIC18.69■□□□□ 0.58
CDKL5O76039 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.69■□□□□ 0.58
CDKL5O76039 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.69■□□□□ 0.58
CDKL5O76039 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CDKL5O76039 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDKL5O76039 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.68■□□□□ 0.58
CDKL5O76039 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.68■□□□□ 0.58
CDKL5O76039 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CDKL5O76039 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.68■□□□□ 0.58
CDKL5O76039 AP006288.1-201ENST00000446065 395 ntBASIC18.68■□□□□ 0.58
CDKL5O76039 AC023141.5-201ENST00000458585 616 ntBASIC18.68■□□□□ 0.58
CDKL5O76039 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.68■□□□□ 0.58
CDKL5O76039 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CDKL5O76039 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CDKL5O76039 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.68■□□□□ 0.58
CDKL5O76039 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 AC018529.1-201ENST00000613063 361 ntBASIC18.68■□□□□ 0.58
CDKL5O76039 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.68■□□□□ 0.58
CDKL5O76039 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CDKL5O76039 AL136982.4-201ENST00000437689 1740 ntBASIC18.68■□□□□ 0.58
CDKL5O76039 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.68■□□□□ 0.58
CDKL5O76039 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDKL5O76039 PRAL-201ENST00000624952 3286 ntBASIC18.68■□□□□ 0.58
CDKL5O76039 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CDKL5O76039 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.67■□□□□ 0.58
CDKL5O76039 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CDKL5O76039 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDKL5O76039 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDKL5O76039 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDKL5O76039 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDKL5O76039 KRT18P13-201ENST00000400056 1290 ntBASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms