Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LDB3O75112 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 AC069224.1-201ENST00000566372 1715 ntBASIC15.14■□□□□ 0.01
LDB3O75112 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 PRAL-201ENST00000624952 3286 ntBASIC15.14■□□□□ 0.01
LDB3O75112 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
LDB3O75112 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.14■□□□□ 0.01
LDB3O75112 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.14■□□□□ 0.01
LDB3O75112 PMS2P2-201ENST00000425039 1128 ntBASIC15.14■□□□□ 0.01
LDB3O75112 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 FAM86GP-201ENST00000448322 971 ntBASIC15.14■□□□□ 0.01
LDB3O75112 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 AC125807.1-201ENST00000483097 614 ntBASIC15.14■□□□□ 0.01
LDB3O75112 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 AC026979.3-201ENST00000607315 403 ntBASIC15.14■□□□□ 0.01
LDB3O75112 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.14■□□□□ 0.01
LDB3O75112 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
LDB3O75112 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDB3O75112 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
LDB3O75112 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.13■□□□□ 0.01
LDB3O75112 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 KLF2P3-201ENST00000451977 1087 ntBASIC15.13■□□□□ 0.01
LDB3O75112 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.13■□□□□ 0.01
LDB3O75112 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.13■□□□□ 0.01
LDB3O75112 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.13■□□□□ 0.01
LDB3O75112 AC243562.2-201ENST00000561247 970 ntBASIC15.13■□□□□ 0.01
LDB3O75112 CYP4F24P-201ENST00000586049 1580 ntBASIC15.13■□□□□ 0.01
LDB3O75112 AC106028.4-201ENST00000614509 607 ntBASIC15.13■□□□□ 0.01
LDB3O75112 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
LDB3O75112 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.13■□□□□ 0.01
LDB3O75112 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.13■□□□□ 0.01
LDB3O75112 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
LDB3O75112 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDB3O75112 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
LDB3O75112 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.13■□□□□ 0.01
LDB3O75112 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.13■□□□□ 0.01
LDB3O75112 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 PAUPAR-201ENST00000630360 2965 ntBASIC15.12■□□□□ 0.01
LDB3O75112 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 AL035456.1-201ENST00000456064 1369 ntBASIC15.12■□□□□ 0.01
LDB3O75112 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
LDB3O75112 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDB3O75112 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms