Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC005034.1-201ENST00000426657 489 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 SDHAP3-202ENST00000515467 728 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC005225.4-201ENST00000557330 545 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC104794.3-201ENST00000566840 1248 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC012645.4-201ENST00000610691 1061 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AL358472.5-202ENST00000641448 1267 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 FLJ38576-201ENST00000623820 2459 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AL136982.4-201ENST00000437689 1740 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC005052.1-201ENST00000625181 2492 ntBASIC14.77□□□□□ -0.04
LRFN1Q9P244 CYP4F24P-201ENST00000586049 1580 ntBASIC14.77□□□□□ -0.04
LRFN1Q9P244 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
LRFN1Q9P244 AC008894.3-201ENST00000624324 3103 ntBASIC14.77□□□□□ -0.04
LRFN1Q9P244 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LRFN1Q9P244 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
LRFN1Q9P244 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.77□□□□□ -0.04
LRFN1Q9P244 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
LRFN1Q9P244 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
LRFN1Q9P244 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LRFN1Q9P244 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LRFN1Q9P244 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LRFN1Q9P244 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
LRFN1Q9P244 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
LRFN1Q9P244 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.77□□□□□ -0.04
LRFN1Q9P244 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.77□□□□□ -0.04
LRFN1Q9P244 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LRFN1Q9P244 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 SPDYE22P-201ENST00000582158 798 ntBASIC14.77□□□□□ -0.05
LRFN1Q9P244 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 AL132655.2-201ENST00000596276 594 ntBASIC14.77□□□□□ -0.05
LRFN1Q9P244 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 AL035252.4-201ENST00000624174 288 ntBASIC14.77□□□□□ -0.05
LRFN1Q9P244 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
LRFN1Q9P244 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LRFN1Q9P244 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.76□□□□□ -0.05
LRFN1Q9P244 ALOX12P2-203ENST00000570921 1945 ntBASIC14.76□□□□□ -0.05
LRFN1Q9P244 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.76□□□□□ -0.05
LRFN1Q9P244 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.76□□□□□ -0.05
LRFN1Q9P244 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 AD000864.1-201ENST00000624076 2295 ntBASIC14.76□□□□□ -0.05
LRFN1Q9P244 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
LRFN1Q9P244 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 AC063926.2-201ENST00000623766 1308 ntBASIC14.76□□□□□ -0.05
LRFN1Q9P244 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LRFN1Q9P244 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms