Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 TMEM261P1-201ENST00000604899 340 ntBASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PAAF1Q9BRP4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AC079776.1-201ENST00000401540 1152 ntBASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AC092552.1-201ENST00000547243 906 ntBASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.04■□□□□ 0.32
PAAF1Q9BRP4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AC018695.7-201ENST00000624587 2492 ntBASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AL450472.2-201ENST00000603663 1156 ntBASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 AC097359.3-201ENST00000603982 1210 ntBASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 RPSAP52-203ENST00000622976 1023 ntBASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PAAF1Q9BRP4 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms