Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 KRT8P10-201ENST00000450021 1447 ntBASIC15.23■□□□□ 0.03
NR1H4Q96RI1 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 HSPA7-201ENST00000445535 1927 ntBASIC15.23■□□□□ 0.03
NR1H4Q96RI1 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NR1H4Q96RI1 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 AP002414.1-201ENST00000391405 1147 ntBASIC15.22■□□□□ 0.03
NR1H4Q96RI1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 AC122714.2-201ENST00000502787 707 ntBASIC15.22■□□□□ 0.03
NR1H4Q96RI1 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 STK19B-204ENST00000512515 211 ntBASIC15.22■□□□□ 0.03
NR1H4Q96RI1 GCSHP2-201ENST00000560971 527 ntBASIC15.22■□□□□ 0.03
NR1H4Q96RI1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 TEN1-204ENST00000588202 862 ntTSL 3 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 KRT8P39-201ENST00000396270 1433 ntBASIC15.22■□□□□ 0.03
NR1H4Q96RI1 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 CR383656.2-201ENST00000548656 2254 ntBASIC15.22■□□□□ 0.03
NR1H4Q96RI1 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
NR1H4Q96RI1 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AC138969.2-201ENST00000532739 9932 ntBASIC15.21■□□□□ 0.03
NR1H4Q96RI1 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 GPAA1P2-202ENST00000606848 1787 ntBASIC15.21■□□□□ 0.03
NR1H4Q96RI1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 CD70-202ENST00000423145 881 ntTSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 LIN28AP1-201ENST00000429574 405 ntBASIC15.21■□□□□ 0.03
NR1H4Q96RI1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AC007967.3-201ENST00000434308 558 ntBASIC15.21■□□□□ 0.03
NR1H4Q96RI1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AL023973.1-201ENST00000624619 620 ntBASIC15.21■□□□□ 0.03
NR1H4Q96RI1 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NR1H4Q96RI1 CICP17-201ENST00000418553 2377 ntBASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms