Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 WASH6P-202ENST00000359512 1437 ntBASIC15.51■□□□□ 0.07
VMP1Q96GC9 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VMP1Q96GC9 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.51■□□□□ 0.07
VMP1Q96GC9 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TFAMP1-201ENST00000412727 736 ntBASIC15.5■□□□□ 0.07
VMP1Q96GC9 CNN2P11-201ENST00000429351 262 ntBASIC15.5■□□□□ 0.07
VMP1Q96GC9 TIMM8BP1-201ENST00000452384 211 ntBASIC15.5■□□□□ 0.07
VMP1Q96GC9 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 AL596442.2-201ENST00000610240 980 ntBASIC15.5■□□□□ 0.07
VMP1Q96GC9 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 KRT8P39-201ENST00000396270 1433 ntBASIC15.5■□□□□ 0.07
VMP1Q96GC9 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VMP1Q96GC9 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VMP1Q96GC9 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VMP1Q96GC9 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 AL135744.1-201ENST00000565098 629 ntBASIC15.49■□□□□ 0.07
VMP1Q96GC9 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 AL513210.1-201ENST00000629608 234 ntBASIC15.49■□□□□ 0.07
VMP1Q96GC9 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 AC105339.1-204ENST00000636249 355 ntBASIC15.49■□□□□ 0.07
VMP1Q96GC9 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.49■□□□□ 0.07
VMP1Q96GC9 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms