Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 AL365203.3-201ENST00000609742 2057 ntBASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AC142381.1-201ENST00000426099 345 ntBASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AL365330.1-201ENST00000607459 531 ntBASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AP001059.3-201ENST00000619053 235 ntBASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP4CQ96CF2 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 IGHV3-42-201ENST00000520410 361 ntBASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 PCDHA1-201ENST00000378133 2726 ntBASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CHMP4CQ96CF2 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP4CQ96CF2 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms