Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC138969.3-201ENST00000546612 1459 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC138932.2-201ENST00000548268 1459 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC126755.4-201ENST00000549796 1459 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 DGCR5-201ENST00000399539 862 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MIR4515-201ENST00000584082 81 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC131009.4-201ENST00000624048 1740 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 KCP-203ENST00000610776 5108 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 VMA21-202ENST00000370361 693 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC093525.9-201ENST00000624961 1746 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AL645608.8-201ENST00000606034 2086 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC129492.6-201ENST00000611383 1305 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CICP6-201ENST00000457191 2729 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CECR7-204ENST00000609932 568 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC116407.2-201ENST00000613639 860 ntBASIC5.02□□□□□ -1.61
SYNE1Q8NF91 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 FOS-208ENST00000555686 1496 ntTSL 2 BASIC5.02□□□□□ -1.61
SYNE1Q8NF91 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SNX33P1-201ENST00000592116 1762 ntBASIC5.01□□□□□ -1.61
SYNE1Q8NF91 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SYNE1Q8NF91 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms