Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 AC135586.1-201ENST00000539323 574 ntBASIC17.5■□□□□ 0.39
VPS52Q8N1B4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS52Q8N1B4 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 AC063926.3-201ENST00000624734 5658 ntBASIC17.49■□□□□ 0.39
VPS52Q8N1B4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 API5-211ENST00000534695 560 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS52Q8N1B4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 GNAQP1-201ENST00000444815 1067 ntBASIC17.48■□□□□ 0.39
VPS52Q8N1B4 AP002490.2-201ENST00000524791 560 ntBASIC17.48■□□□□ 0.39
VPS52Q8N1B4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS52Q8N1B4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS52Q8N1B4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS52Q8N1B4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms