Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SCN1BQ07699 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SCN1BQ07699 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SCN1BQ07699 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
SCN1BQ07699 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SCN1BQ07699 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 CICP23-201ENST00000605013 2741 ntBASIC14.44□□□□□ -0.1
SCN1BQ07699 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
SCN1BQ07699 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SCN1BQ07699 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SCN1BQ07699 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SCN1BQ07699 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.44□□□□□ -0.1
SCN1BQ07699 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
SCN1BQ07699 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.44□□□□□ -0.1
SCN1BQ07699 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
SCN1BQ07699 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.44□□□□□ -0.1
SCN1BQ07699 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 FICD-205ENST00000552758 603 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.44□□□□□ -0.1
SCN1BQ07699 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.44□□□□□ -0.1
SCN1BQ07699 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
SCN1BQ07699 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.44□□□□□ -0.1
SCN1BQ07699 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.43□□□□□ -0.1
SCN1BQ07699 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
SCN1BQ07699 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
SCN1BQ07699 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
SCN1BQ07699 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 CYB561-217ENST00000582997 877 ntTSL 5 BASIC14.43□□□□□ -0.1
SCN1BQ07699 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.43□□□□□ -0.1
SCN1BQ07699 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.43□□□□□ -0.1
SCN1BQ07699 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC14.43□□□□□ -0.1
SCN1BQ07699 AC067750.1-201ENST00000608826 6545 ntBASIC14.43□□□□□ -0.1
SCN1BQ07699 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SCN1BQ07699 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.43□□□□□ -0.1
SCN1BQ07699 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SCN1BQ07699 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms