Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC12.17□□□□□ -0.46
FOXA3P55318 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 LINC01238-205ENST00000567549 1107 ntBASIC12.17□□□□□ -0.46
FOXA3P55318 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 HYMAI.1-201ENST00000620949 238 ntBASIC12.17□□□□□ -0.46
FOXA3P55318 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 AP000867.4-201ENST00000641616 219 ntBASIC12.17□□□□□ -0.46
FOXA3P55318 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 LINC00528-201ENST00000600723 2160 ntBASIC12.17□□□□□ -0.46
FOXA3P55318 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC12.17□□□□□ -0.46
FOXA3P55318 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA3P55318 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 GID4-202ENST00000376345 1391 ntTSL 3 BASIC12.17□□□□□ -0.46
FOXA3P55318 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
FOXA3P55318 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.17□□□□□ -0.46
FOXA3P55318 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA3P55318 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
FOXA3P55318 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
FOXA3P55318 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 CICP23-201ENST00000605013 2741 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
FOXA3P55318 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.16□□□□□ -0.46
FOXA3P55318 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC12.16□□□□□ -0.46
FOXA3P55318 LIN28AP1-201ENST00000429574 405 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 AC112907.2-201ENST00000448639 330 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 ATP5G1P1-201ENST00000448724 379 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC12.16□□□□□ -0.46
FOXA3P55318 YBX1P2-201ENST00000489612 999 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 LY6E-213ENST00000522528 606 ntTSL 3 BASIC12.16□□□□□ -0.46
FOXA3P55318 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
FOXA3P55318 AC091167.2-201ENST00000579581 588 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 MIR4497-201ENST00000583208 89 ntBASIC12.16□□□□□ -0.46
FOXA3P55318 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 DFFB-212ENST00000625756 649 ntTSL 5 BASIC12.16□□□□□ -0.46
FOXA3P55318 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
FOXA3P55318 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.16□□□□□ -0.46
FOXA3P55318 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
FOXA3P55318 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA3P55318 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA3P55318 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA3P55318 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA3P55318 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA3P55318 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms