Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 AC022532.1-201ENST00000624563 1728 ntBASIC15.8■□□□□ 0.12
CDH13P55290 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CDH13P55290 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
CDH13P55290 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDH13P55290 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH13P55290 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CDH13P55290 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.8■□□□□ 0.12
CDH13P55290 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.8■□□□□ 0.12
CDH13P55290 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CDH13P55290 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CDH13P55290 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.8■□□□□ 0.12
CDH13P55290 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDH13P55290 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 SSR4P1-203ENST00000599569 2260 ntBASIC15.79■□□□□ 0.12
CDH13P55290 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH13P55290 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH13P55290 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.79■□□□□ 0.12
CDH13P55290 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH13P55290 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.79■□□□□ 0.12
CDH13P55290 AC145285.3-201ENST00000564603 959 ntBASIC15.79■□□□□ 0.12
CDH13P55290 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 AL365330.1-201ENST00000607459 531 ntBASIC15.79■□□□□ 0.12
CDH13P55290 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.79■□□□□ 0.12
CDH13P55290 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDH13P55290 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
CDH13P55290 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CDH13P55290 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.79■□□□□ 0.12
CDH13P55290 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
CDH13P55290 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.78■□□□□ 0.12
CDH13P55290 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CDH13P55290 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.78■□□□□ 0.12
CDH13P55290 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
CDH13P55290 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH13P55290 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.78■□□□□ 0.12
CDH13P55290 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH13P55290 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.78■□□□□ 0.12
CDH13P55290 AC002347.1-201ENST00000569543 541 ntBASIC15.78■□□□□ 0.12
CDH13P55290 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH13P55290 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CDH13P55290 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.78■□□□□ 0.12
CDH13P55290 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH13P55290 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CDH13P55290 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CDH13P55290 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.78■□□□□ 0.12
CDH13P55290 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CDH13P55290 WASH6P-202ENST00000359512 1437 ntBASIC15.77■□□□□ 0.12
CDH13P55290 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms