Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.03■□□□□ 0.32
LIG3P49916 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LIG3P49916 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.03■□□□□ 0.32
LIG3P49916 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 BCAR1-209ENST00000546196 1340 ntBASIC17.02■□□□□ 0.32
LIG3P49916 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LIG3P49916 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.02■□□□□ 0.32
LIG3P49916 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
LIG3P49916 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LIG3P49916 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
LIG3P49916 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.02■□□□□ 0.32
LIG3P49916 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.02■□□□□ 0.32
LIG3P49916 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.02■□□□□ 0.32
LIG3P49916 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
LIG3P49916 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.02■□□□□ 0.32
LIG3P49916 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.02■□□□□ 0.32
LIG3P49916 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LIG3P49916 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LIG3P49916 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LIG3P49916 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
LIG3P49916 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIG3P49916 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIG3P49916 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.02■□□□□ 0.31
LIG3P49916 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
LIG3P49916 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.31
LIG3P49916 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LIG3P49916 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.02■□□□□ 0.31
LIG3P49916 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LIG3P49916 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.01■□□□□ 0.31
LIG3P49916 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.01■□□□□ 0.31
LIG3P49916 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.01■□□□□ 0.31
LIG3P49916 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.01■□□□□ 0.31
LIG3P49916 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.01■□□□□ 0.31
LIG3P49916 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.01■□□□□ 0.31
LIG3P49916 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.01■□□□□ 0.31
LIG3P49916 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.01■□□□□ 0.31
LIG3P49916 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 AC010327.4-202ENST00000591484 748 ntBASIC17.01■□□□□ 0.31
LIG3P49916 ACTL9-202ENST00000612068 1252 ntBASIC17.01■□□□□ 0.31
LIG3P49916 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LIG3P49916 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
LIG3P49916 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.01■□□□□ 0.31
LIG3P49916 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 PPT1-215ENST00000641471 2368 ntBASIC17.01■□□□□ 0.31
LIG3P49916 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LIG3P49916 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms