Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CTCFP49711 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC18.55■□□□□ 0.56
CTCFP49711 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC18.55■□□□□ 0.56
CTCFP49711 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CTCFP49711 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CTCFP49711 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 INTS4P2-202ENST00000614726 2019 ntBASIC18.54■□□□□ 0.56
CTCFP49711 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.54■□□□□ 0.56
CTCFP49711 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.54■□□□□ 0.56
CTCFP49711 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 MIR1227-201ENST00000408484 88 ntBASIC18.54■□□□□ 0.56
CTCFP49711 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.54■□□□□ 0.56
CTCFP49711 RPL13AP25-201ENST00000484130 612 ntBASIC18.54■□□□□ 0.56
CTCFP49711 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.54■□□□□ 0.56
CTCFP49711 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.54■□□□□ 0.56
CTCFP49711 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 HNRNPA1P48-202ENST00000565308 961 ntBASIC18.54■□□□□ 0.56
CTCFP49711 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
CTCFP49711 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 KRT8P49-201ENST00000604166 1432 ntBASIC18.54■□□□□ 0.56
CTCFP49711 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.54■□□□□ 0.56
CTCFP49711 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CTCFP49711 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 PP12613-201ENST00000424958 2230 ntBASIC18.54■□□□□ 0.56
CTCFP49711 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CTCFP49711 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.54■□□□□ 0.56
CTCFP49711 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.54■□□□□ 0.56
CTCFP49711 AC015818.8-201ENST00000587907 1519 ntBASIC18.54■□□□□ 0.56
CTCFP49711 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
CTCFP49711 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CTCFP49711 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.54■□□□□ 0.56
CTCFP49711 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 AL645608.8-201ENST00000606034 2086 ntBASIC18.53■□□□□ 0.56
CTCFP49711 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.53■□□□□ 0.56
CTCFP49711 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 MSTO2P-201ENST00000314835 1709 ntBASIC18.53■□□□□ 0.56
CTCFP49711 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC18.53■□□□□ 0.56
CTCFP49711 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 FO393414.2-201ENST00000405153 598 ntBASIC18.53■□□□□ 0.56
CTCFP49711 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 HOMER2P2-201ENST00000451621 847 ntBASIC18.53■□□□□ 0.56
CTCFP49711 PPOX-204ENST00000462866 473 ntTSL 5 BASIC18.53■□□□□ 0.56
CTCFP49711 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.53■□□□□ 0.56
CTCFP49711 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.53■□□□□ 0.56
CTCFP49711 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.53■□□□□ 0.56
CTCFP49711 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.53■□□□□ 0.56
CTCFP49711 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CTCFP49711 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
CTCFP49711 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.53■□□□□ 0.56
CTCFP49711 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CTCFP49711 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.53■□□□□ 0.56
CTCFP49711 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.52■□□□□ 0.56
CTCFP49711 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTCFP49711 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CTCFP49711 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTCFP49711 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTCFP49711 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CTCFP49711 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CTCFP49711 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CTCFP49711 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CTCFP49711 AC006001.1-201ENST00000325130 474 ntBASIC18.52■□□□□ 0.56
CTCFP49711 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC18.52■□□□□ 0.56
CTCFP49711 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms