Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.03□□□□□ -0.16
COL8A1P27658 FNTAP2-201ENST00000430308 634 ntBASIC14.03□□□□□ -0.16
COL8A1P27658 AL355864.2-201ENST00000447420 863 ntBASIC14.03□□□□□ -0.16
COL8A1P27658 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.03□□□□□ -0.16
COL8A1P27658 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.03□□□□□ -0.16
COL8A1P27658 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC14.03□□□□□ -0.16
COL8A1P27658 AC061975.2-201ENST00000581722 295 ntBASIC14.03□□□□□ -0.16
COL8A1P27658 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.03□□□□□ -0.16
COL8A1P27658 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL8A1P27658 AC128714.1-201ENST00000637035 887 ntBASIC14.03□□□□□ -0.16
COL8A1P27658 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC14.03□□□□□ -0.16
COL8A1P27658 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC14.03□□□□□ -0.16
COL8A1P27658 AL607033.1-201ENST00000623900 1599 ntBASIC14.03□□□□□ -0.16
COL8A1P27658 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 AC012317.2-201ENST00000623305 2251 ntBASIC14.03□□□□□ -0.16
COL8A1P27658 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
COL8A1P27658 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC14.03□□□□□ -0.16
COL8A1P27658 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL8A1P27658 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL8A1P27658 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.02□□□□□ -0.16
COL8A1P27658 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.02□□□□□ -0.16
COL8A1P27658 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
COL8A1P27658 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
COL8A1P27658 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL8A1P27658 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.02□□□□□ -0.17
COL8A1P27658 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.02□□□□□ -0.17
COL8A1P27658 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.02□□□□□ -0.17
COL8A1P27658 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC14.02□□□□□ -0.17
COL8A1P27658 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.02□□□□□ -0.17
COL8A1P27658 UPF3AP2-201ENST00000457924 1132 ntBASIC14.02□□□□□ -0.17
COL8A1P27658 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.02□□□□□ -0.17
COL8A1P27658 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 FAM86HP-204ENST00000513466 959 ntBASIC14.02□□□□□ -0.17
COL8A1P27658 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.02□□□□□ -0.17
COL8A1P27658 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC14.02□□□□□ -0.17
COL8A1P27658 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC14.02□□□□□ -0.17
COL8A1P27658 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.02□□□□□ -0.17
COL8A1P27658 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.17
COL8A1P27658 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
COL8A1P27658 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.02□□□□□ -0.17
COL8A1P27658 AC009053.2-201ENST00000563701 2365 ntBASIC14.02□□□□□ -0.17
COL8A1P27658 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.02□□□□□ -0.17
COL8A1P27658 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.02□□□□□ -0.17
COL8A1P27658 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL8A1P27658 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL8A1P27658 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
COL8A1P27658 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.01□□□□□ -0.17
COL8A1P27658 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
COL8A1P27658 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL8A1P27658 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
COL8A1P27658 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
COL8A1P27658 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.01□□□□□ -0.17
COL8A1P27658 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL8A1P27658 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
COL8A1P27658 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL8A1P27658 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL8A1P27658 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.01□□□□□ -0.17
COL8A1P27658 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL8A1P27658 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
COL8A1P27658 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.01□□□□□ -0.17
COL8A1P27658 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
COL8A1P27658 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
COL8A1P27658 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms