Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 AC093724.1-201ENST00000448659 1027 ntBASIC14.34□□□□□ -0.11
SGCEO43556 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.34□□□□□ -0.11
SGCEO43556 POLD2P1-201ENST00000511220 997 ntBASIC14.34□□□□□ -0.11
SGCEO43556 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.34□□□□□ -0.11
SGCEO43556 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.34□□□□□ -0.11
SGCEO43556 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
SGCEO43556 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
SGCEO43556 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
SGCEO43556 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.34□□□□□ -0.11
SGCEO43556 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.34□□□□□ -0.11
SGCEO43556 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.34□□□□□ -0.11
SGCEO43556 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SGCEO43556 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.34□□□□□ -0.11
SGCEO43556 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.34□□□□□ -0.11
SGCEO43556 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SGCEO43556 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
SGCEO43556 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
SGCEO43556 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SGCEO43556 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SGCEO43556 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SGCEO43556 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.33□□□□□ -0.11
SGCEO43556 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.33□□□□□ -0.11
SGCEO43556 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SGCEO43556 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.33□□□□□ -0.12
SGCEO43556 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
SGCEO43556 AC073439.1-201ENST00000624121 1774 ntBASIC14.33□□□□□ -0.12
SGCEO43556 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SGCEO43556 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.33□□□□□ -0.12
SGCEO43556 RARRES2P8-201ENST00000566335 367 ntBASIC14.33□□□□□ -0.12
SGCEO43556 AC091812.2-201ENST00000619081 385 ntBASIC14.33□□□□□ -0.12
SGCEO43556 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.33□□□□□ -0.12
SGCEO43556 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SGCEO43556 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.33□□□□□ -0.12
SGCEO43556 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
SGCEO43556 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SGCEO43556 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SGCEO43556 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.32□□□□□ -0.12
SGCEO43556 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
SGCEO43556 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.32□□□□□ -0.12
SGCEO43556 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.32□□□□□ -0.12
SGCEO43556 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SGCEO43556 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SGCEO43556 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
SGCEO43556 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.32□□□□□ -0.12
SGCEO43556 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
SGCEO43556 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
SGCEO43556 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
SGCEO43556 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.32□□□□□ -0.12
SGCEO43556 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
SGCEO43556 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms