Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 MTND2P16-201ENST00000419987 799 ntBASIC22.51■■□□□ 1.19
MSH5O43196 MTCO3P5-201ENST00000433620 714 ntBASIC22.51■■□□□ 1.19
MSH5O43196 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC22.51■■□□□ 1.19
MSH5O43196 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH5O43196 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC22.51■■□□□ 1.19
MSH5O43196 PUDP-206ENST00000540122 825 ntTSL 2 BASIC22.51■■□□□ 1.19
MSH5O43196 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
MSH5O43196 KRT19P2-202ENST00000557173 1012 ntBASIC22.51■■□□□ 1.19
MSH5O43196 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
MSH5O43196 AC095055.1-201ENST00000603472 1113 ntBASIC22.51■■□□□ 1.19
MSH5O43196 AL035252.4-201ENST00000624174 288 ntBASIC22.51■■□□□ 1.19
MSH5O43196 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
MSH5O43196 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
MSH5O43196 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH5O43196 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
MSH5O43196 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
MSH5O43196 MTND4P29-201ENST00000503122 1372 ntBASIC22.5■■□□□ 1.19
MSH5O43196 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
MSH5O43196 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC22.5■■□□□ 1.19
MSH5O43196 MTND5P25-201ENST00000430499 799 ntBASIC22.5■■□□□ 1.19
MSH5O43196 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC22.5■■□□□ 1.19
MSH5O43196 AL359873.1-201ENST00000447908 764 ntTSL 3 BASIC22.5■■□□□ 1.19
MSH5O43196 Z97198.1-201ENST00000452366 658 ntTSL 2 BASIC22.5■■□□□ 1.19
MSH5O43196 AC008417.1-201ENST00000510014 565 ntBASIC22.5■■□□□ 1.19
MSH5O43196 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 AC190387.1-201ENST00000551683 408 ntBASIC22.5■■□□□ 1.19
MSH5O43196 RPL28-205ENST00000558131 444 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 AQP6-205ENST00000618286 829 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 AC116631.1-202ENST00000640984 683 ntBASIC22.5■■□□□ 1.19
MSH5O43196 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
MSH5O43196 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC22.5■■□□□ 1.19
MSH5O43196 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
MSH5O43196 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC22.5■■□□□ 1.19
MSH5O43196 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
MSH5O43196 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
MSH5O43196 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
MSH5O43196 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC22.49■■□□□ 1.19
MSH5O43196 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC22.49■■□□□ 1.19
MSH5O43196 ACTG1P14-201ENST00000446382 1122 ntBASIC22.49■■□□□ 1.19
MSH5O43196 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 AC074386.1-202ENST00000463561 864 ntBASIC22.49■■□□□ 1.19
MSH5O43196 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
MSH5O43196 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC22.49■■□□□ 1.19
MSH5O43196 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
MSH5O43196 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 LINC02228-204ENST00000642115 2962 ntBASIC22.49■■□□□ 1.19
MSH5O43196 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
MSH5O43196 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 NCF1C-201ENST00000438382 1427 ntBASIC22.48■■□□□ 1.19
MSH5O43196 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 AC025580.3-201ENST00000617932 1424 ntBASIC22.48■■□□□ 1.19
MSH5O43196 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
MSH5O43196 PCF11-AS1-201ENST00000602322 1516 ntBASIC22.48■■□□□ 1.19
MSH5O43196 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
MSH5O43196 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms