Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC39Q9UFE4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
CCDC39Q9UFE4 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 SNX18-202ENST00000343017 3140 ntBASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 HMGA1P7-201ENST00000406908 502 ntBASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 IGLL3P-201ENST00000412472 434 ntBASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 AC096734.2-201ENST00000562054 433 ntBASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 AC020765.3-201ENST00000613051 740 ntBASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 AC112504.1-201ENST00000623415 1841 ntBASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC39Q9UFE4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 PCGF3-213ENST00000620529 1899 ntBASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC39Q9UFE4 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms