Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.8□□□□□ -0.04
LRFN1Q9P244 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.8□□□□□ -0.04
LRFN1Q9P244 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.8□□□□□ -0.04
LRFN1Q9P244 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.8□□□□□ -0.04
LRFN1Q9P244 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.8□□□□□ -0.04
LRFN1Q9P244 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 AL592424.1-201ENST00000563624 1536 ntBASIC14.8□□□□□ -0.04
LRFN1Q9P244 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.8□□□□□ -0.04
LRFN1Q9P244 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 MST1L-201ENST00000442552 2185 ntBASIC14.8□□□□□ -0.04
LRFN1Q9P244 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LRFN1Q9P244 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 NF2-208ENST00000403435 2568 ntTSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 AC044860.1-202ENST00000559481 777 ntBASIC14.79□□□□□ -0.04
LRFN1Q9P244 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 AC092171.3-201ENST00000610122 2651 ntBASIC14.79□□□□□ -0.04
LRFN1Q9P244 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 AL662799.1-202ENST00000614205 422 ntBASIC14.79□□□□□ -0.04
LRFN1Q9P244 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
LRFN1Q9P244 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
LRFN1Q9P244 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AL391005.1-201ENST00000623953 2435 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.78□□□□□ -0.04
LRFN1Q9P244 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 AC007541.1-201ENST00000570282 1469 ntBASIC14.78□□□□□ -0.04
LRFN1Q9P244 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LRFN1Q9P244 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms