Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 KRT18P67-201ENST00000432816 1264 ntBASIC17.44■□□□□ 0.38
CCDC42Q96M95 AC245100.5-201ENST00000452108 331 ntBASIC17.44■□□□□ 0.38
CCDC42Q96M95 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC42Q96M95 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC42Q96M95 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 KRT18P34-201ENST00000488218 1270 ntBASIC17.43■□□□□ 0.38
CCDC42Q96M95 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 UNC93B7-201ENST00000509439 705 ntBASIC17.43■□□□□ 0.38
CCDC42Q96M95 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 AC087481.3-201ENST00000602886 1894 ntBASIC17.43■□□□□ 0.38
CCDC42Q96M95 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 AC126755.1-201ENST00000525846 6405 ntBASIC17.43■□□□□ 0.38
CCDC42Q96M95 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CCDC42Q96M95 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CCDC42Q96M95 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.42■□□□□ 0.38
CCDC42Q96M95 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 AC006486.2-201ENST00000624246 2199 ntBASIC17.42■□□□□ 0.38
CCDC42Q96M95 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CCDC42Q96M95 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms