Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 AC002347.1-201ENST00000569543 541 ntBASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
ATG4AQ8WYN0 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 AC092127.1-201ENST00000567093 3455 ntBASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 AC245100.5-201ENST00000452108 331 ntBASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 KRT126P-201ENST00000549467 1181 ntBASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 AC034105.1-201ENST00000563488 319 ntBASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 AL365330.1-201ENST00000607459 531 ntBASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
ATG4AQ8WYN0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 AC011477.6-201ENST00000604980 1927 ntBASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
ATG4AQ8WYN0 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms