Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 AC015936.2-201ENST00000593177 259 ntBASIC16.11■□□□□ 0.17
HMGB4Q8WW32 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 AC010319.3-201ENST00000597028 470 ntBASIC16.11■□□□□ 0.17
HMGB4Q8WW32 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HMGB4Q8WW32 TNRC18P3-201ENST00000441896 2691 ntBASIC16.11■□□□□ 0.17
HMGB4Q8WW32 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 RNF216P1-203ENST00000404404 2427 ntBASIC16.1■□□□□ 0.17
HMGB4Q8WW32 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 AC036164.1-201ENST00000570544 333 ntBASIC16.1■□□□□ 0.17
HMGB4Q8WW32 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 MIR6775-201ENST00000617557 69 ntBASIC16.1■□□□□ 0.17
HMGB4Q8WW32 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 COX11-210ENST00000639671 696 ntBASIC16.1■□□□□ 0.17
HMGB4Q8WW32 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 AC080080.1-201ENST00000625121 2420 ntBASIC16.1■□□□□ 0.17
HMGB4Q8WW32 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 HLA-A-202ENST00000376806 1854 ntBASIC16.1■□□□□ 0.17
HMGB4Q8WW32 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HMGB4Q8WW32 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 AL645608.8-201ENST00000606034 2086 ntBASIC16.09■□□□□ 0.17
HMGB4Q8WW32 Z97205.2-201ENST00000564697 1639 ntBASIC16.09■□□□□ 0.17
HMGB4Q8WW32 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 RN7SL399P-201ENST00000471648 279 ntBASIC16.09■□□□□ 0.17
HMGB4Q8WW32 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 SNX29P1-201ENST00000548357 1007 ntBASIC16.09■□□□□ 0.17
HMGB4Q8WW32 AP005482.1-201ENST00000563722 1273 ntBASIC16.09■□□□□ 0.17
HMGB4Q8WW32 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.09■□□□□ 0.17
HMGB4Q8WW32 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms