Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.32■□□□□ 0.04
LIM2P55344 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
LIM2P55344 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.32■□□□□ 0.04
LIM2P55344 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.32■□□□□ 0.04
LIM2P55344 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIM2P55344 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LIM2P55344 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 HAUS4P1-201ENST00000406739 1145 ntBASIC15.31■□□□□ 0.04
LIM2P55344 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.31■□□□□ 0.04
LIM2P55344 AC109322.1-201ENST00000524499 1264 ntBASIC15.31■□□□□ 0.04
LIM2P55344 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.31■□□□□ 0.04
LIM2P55344 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.31■□□□□ 0.04
LIM2P55344 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.31■□□□□ 0.04
LIM2P55344 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LIM2P55344 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LIM2P55344 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LIM2P55344 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
LIM2P55344 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIM2P55344 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LIM2P55344 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.3■□□□□ 0.04
LIM2P55344 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 AL512356.2-201ENST00000546955 174 ntBASIC15.3■□□□□ 0.04
LIM2P55344 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
LIM2P55344 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.3■□□□□ 0.04
LIM2P55344 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LIM2P55344 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIM2P55344 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LIM2P55344 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LIM2P55344 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.29■□□□□ 0.04
LIM2P55344 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms