Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.3■□□□□ 0.36
VCPP55072 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCPP55072 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VCPP55072 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VCPP55072 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VCPP55072 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.29■□□□□ 0.36
VCPP55072 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.29■□□□□ 0.36
VCPP55072 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.29■□□□□ 0.36
VCPP55072 AL162274.1-201ENST00000617191 1098 ntBASIC17.29■□□□□ 0.36
VCPP55072 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.29■□□□□ 0.36
VCPP55072 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
VCPP55072 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
VCPP55072 GGT4P-201ENST00000623672 1708 ntBASIC17.29■□□□□ 0.36
VCPP55072 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
VCPP55072 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 KRT8P39-201ENST00000396270 1433 ntBASIC17.29■□□□□ 0.36
VCPP55072 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.29■□□□□ 0.36
VCPP55072 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VCPP55072 AL031731.1-201ENST00000642131 2094 ntBASIC17.28■□□□□ 0.36
VCPP55072 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.28■□□□□ 0.36
VCPP55072 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.28■□□□□ 0.36
VCPP55072 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.28■□□□□ 0.36
VCPP55072 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
VCPP55072 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
VCPP55072 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.28■□□□□ 0.36
VCPP55072 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 REEP4-207ENST00000523293 913 ntTSL 3 BASIC17.28■□□□□ 0.36
VCPP55072 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.28■□□□□ 0.36
VCPP55072 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
VCPP55072 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.28■□□□□ 0.36
VCPP55072 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 AP001350.2-201ENST00000625104 1094 ntBASIC17.28■□□□□ 0.36
VCPP55072 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VCPP55072 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
VCPP55072 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
VCPP55072 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
VCPP55072 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VCPP55072 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.28■□□□□ 0.36
VCPP55072 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VCPP55072 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.27■□□□□ 0.36
VCPP55072 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VCPP55072 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
VCPP55072 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VCPP55072 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms