Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
HOXD3P31249 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 GRAMD4P3-201ENST00000621665 1669 ntBASIC12.49□□□□□ -0.41
HOXD3P31249 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXD3P31249 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXD3P31249 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC12.49□□□□□ -0.41
HOXD3P31249 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 AC007967.4-201ENST00000614700 386 ntBASIC12.49□□□□□ -0.41
HOXD3P31249 AC025048.6-201ENST00000634326 1161 ntBASIC12.49□□□□□ -0.41
HOXD3P31249 AL358472.5-202ENST00000641448 1267 ntBASIC12.49□□□□□ -0.41
HOXD3P31249 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC12.49□□□□□ -0.41
HOXD3P31249 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC12.49□□□□□ -0.41
HOXD3P31249 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
HOXD3P31249 AC068587.6-202ENST00000641839 5619 ntBASIC12.48□□□□□ -0.41
HOXD3P31249 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
HOXD3P31249 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 TNRC18P3-201ENST00000441896 2691 ntBASIC12.48□□□□□ -0.41
HOXD3P31249 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
HOXD3P31249 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 TSSK5P-201ENST00000423978 907 ntBASIC12.48□□□□□ -0.41
HOXD3P31249 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.48□□□□□ -0.41
HOXD3P31249 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
HOXD3P31249 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
HOXD3P31249 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
HOXD3P31249 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms