Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
MSH3P20585 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
MSH3P20585 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.09■□□□□ 0.17
MSH3P20585 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.09■□□□□ 0.17
MSH3P20585 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.09■□□□□ 0.17
MSH3P20585 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 AC026150.2-201ENST00000564693 1156 ntBASIC16.09■□□□□ 0.17
MSH3P20585 MIR4321-201ENST00000592276 80 ntBASIC16.09■□□□□ 0.17
MSH3P20585 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.09■□□□□ 0.17
MSH3P20585 AL596087.1-201ENST00000400979 1969 ntBASIC16.09■□□□□ 0.17
MSH3P20585 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.09■□□□□ 0.17
MSH3P20585 AL365203.3-201ENST00000609742 2057 ntBASIC16.09■□□□□ 0.17
MSH3P20585 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
MSH3P20585 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSH3P20585 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
MSH3P20585 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
MSH3P20585 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.08■□□□□ 0.17
MSH3P20585 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
MSH3P20585 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.08■□□□□ 0.17
MSH3P20585 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.08■□□□□ 0.17
MSH3P20585 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.08■□□□□ 0.17
MSH3P20585 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
MSH3P20585 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.08■□□□□ 0.16
MSH3P20585 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.08■□□□□ 0.16
MSH3P20585 SPDYE14P-201ENST00000442619 822 ntBASIC16.08■□□□□ 0.16
MSH3P20585 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 HLA-J-203ENST00000494367 1087 ntBASIC16.08■□□□□ 0.16
MSH3P20585 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.08■□□□□ 0.16
MSH3P20585 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC16.08■□□□□ 0.16
MSH3P20585 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.08■□□□□ 0.16
MSH3P20585 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.08■□□□□ 0.16
MSH3P20585 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.08■□□□□ 0.16
MSH3P20585 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 AP001059.3-201ENST00000619053 235 ntBASIC16.08■□□□□ 0.16
MSH3P20585 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 AC007950.2-201ENST00000615045 2347 ntBASIC16.08■□□□□ 0.16
MSH3P20585 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
MSH3P20585 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.08■□□□□ 0.16
MSH3P20585 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSH3P20585 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms