Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.68■□□□□ 0.58
ERCC3P19447 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.68■□□□□ 0.58
ERCC3P19447 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.68■□□□□ 0.58
ERCC3P19447 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
ERCC3P19447 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC3P19447 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ERCC3P19447 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
ERCC3P19447 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ERCC3P19447 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
ERCC3P19447 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.67■□□□□ 0.58
ERCC3P19447 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
ERCC3P19447 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.67■□□□□ 0.58
ERCC3P19447 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 AL162727.3-201ENST00000635661 2787 ntBASIC18.67■□□□□ 0.58
ERCC3P19447 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.67■□□□□ 0.58
ERCC3P19447 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC3P19447 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.67■□□□□ 0.58
ERCC3P19447 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC3P19447 AP006294.1-201ENST00000415407 339 ntBASIC18.67■□□□□ 0.58
ERCC3P19447 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC3P19447 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
ERCC3P19447 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ERCC3P19447 GIMAP3P-201ENST00000495150 836 ntBASIC18.67■□□□□ 0.58
ERCC3P19447 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC3P19447 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.67■□□□□ 0.58
ERCC3P19447 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC3P19447 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 AC018695.7-201ENST00000624587 2492 ntBASIC18.67■□□□□ 0.58
ERCC3P19447 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.67■□□□□ 0.58
ERCC3P19447 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ERCC3P19447 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC3P19447 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
ERCC3P19447 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ERCC3P19447 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 GGT4P-201ENST00000623672 1708 ntBASIC18.66■□□□□ 0.58
ERCC3P19447 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.66■□□□□ 0.58
ERCC3P19447 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ERCC3P19447 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.66■□□□□ 0.58
ERCC3P19447 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.66■□□□□ 0.58
ERCC3P19447 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 RN7SL752P-201ENST00000463779 287 ntBASIC18.66■□□□□ 0.58
ERCC3P19447 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.66■□□□□ 0.58
ERCC3P19447 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.66■□□□□ 0.58
ERCC3P19447 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC3P19447 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.66■□□□□ 0.58
ERCC3P19447 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC3P19447 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ERCC3P19447 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.66■□□□□ 0.58
ERCC3P19447 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.65■□□□□ 0.58
ERCC3P19447 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ERCC3P19447 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ERCC3P19447 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ERCC3P19447 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 FER1L4-210ENST00000615531 5998 ntBASIC18.65■□□□□ 0.58
ERCC3P19447 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.65■□□□□ 0.58
ERCC3P19447 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ERCC3P19447 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
ERCC3P19447 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC3P19447 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.65■□□□□ 0.58
ERCC3P19447 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC3P19447 SRD5A3P1-201ENST00000603021 949 ntBASIC18.65■□□□□ 0.58
ERCC3P19447 MIR6752-201ENST00000618442 71 ntBASIC18.65■□□□□ 0.58
ERCC3P19447 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
ERCC3P19447 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC3P19447 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
ERCC3P19447 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms