Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.94■□□□□ 0.3
APOEP02649 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.94■□□□□ 0.3
APOEP02649 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.94■□□□□ 0.3
APOEP02649 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.94■□□□□ 0.3
APOEP02649 FAM86GP-201ENST00000448322 971 ntBASIC16.94■□□□□ 0.3
APOEP02649 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.94■□□□□ 0.3
APOEP02649 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.94■□□□□ 0.3
APOEP02649 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.94■□□□□ 0.3
APOEP02649 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.94■□□□□ 0.3
APOEP02649 AL365330.1-201ENST00000607459 531 ntBASIC16.94■□□□□ 0.3
APOEP02649 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
APOEP02649 Z92544.3-201ENST00000624747 417 ntBASIC16.94■□□□□ 0.3
APOEP02649 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.94■□□□□ 0.3
APOEP02649 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.94■□□□□ 0.3
APOEP02649 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
APOEP02649 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.94■□□□□ 0.3
APOEP02649 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
APOEP02649 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.93■□□□□ 0.3
APOEP02649 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.93■□□□□ 0.3
APOEP02649 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.93■□□□□ 0.3
APOEP02649 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
APOEP02649 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
APOEP02649 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.93■□□□□ 0.3
APOEP02649 AL645939.2-201ENST00000427340 991 ntBASIC16.93■□□□□ 0.3
APOEP02649 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.93■□□□□ 0.3
APOEP02649 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.93■□□□□ 0.3
APOEP02649 AC067863.1-201ENST00000494933 530 ntBASIC16.93■□□□□ 0.3
APOEP02649 AC069262.1-201ENST00000539058 672 ntBASIC16.93■□□□□ 0.3
APOEP02649 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 AC018529.1-201ENST00000613063 361 ntBASIC16.93■□□□□ 0.3
APOEP02649 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.93■□□□□ 0.3
APOEP02649 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.93■□□□□ 0.3
APOEP02649 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
APOEP02649 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
APOEP02649 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.93■□□□□ 0.3
APOEP02649 AL365203.3-201ENST00000609742 2057 ntBASIC16.93■□□□□ 0.3
APOEP02649 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.93■□□□□ 0.3
APOEP02649 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
APOEP02649 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
APOEP02649 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
APOEP02649 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
APOEP02649 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
APOEP02649 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
APOEP02649 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
APOEP02649 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
APOEP02649 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
APOEP02649 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.92■□□□□ 0.3
APOEP02649 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms