Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
SDCBPO00560 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SDCBPO00560 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC13.8□□□□□ -0.2
SDCBPO00560 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC13.8□□□□□ -0.2
SDCBPO00560 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC13.8□□□□□ -0.2
SDCBPO00560 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.8□□□□□ -0.2
SDCBPO00560 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 AC108073.2-201ENST00000464002 357 ntBASIC13.8□□□□□ -0.2
SDCBPO00560 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC13.8□□□□□ -0.2
SDCBPO00560 AC093909.1-201ENST00000504731 1122 ntBASIC13.8□□□□□ -0.2
SDCBPO00560 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.8□□□□□ -0.2
SDCBPO00560 KRT126P-201ENST00000549467 1181 ntBASIC13.8□□□□□ -0.2
SDCBPO00560 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.8□□□□□ -0.2
SDCBPO00560 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.8□□□□□ -0.2
SDCBPO00560 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC13.8□□□□□ -0.2
SDCBPO00560 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC13.8□□□□□ -0.2
SDCBPO00560 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC13.8□□□□□ -0.2
SDCBPO00560 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SDCBPO00560 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
SDCBPO00560 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
SDCBPO00560 MIR648-201ENST00000385046 94 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 HCG4-201ENST00000418983 998 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 AL031284.1-201ENST00000419297 478 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.79□□□□□ -0.2
SDCBPO00560 AP002469.2-201ENST00000531724 424 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.79□□□□□ -0.2
SDCBPO00560 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 MIR4751-201ENST00000578027 74 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.79□□□□□ -0.2
SDCBPO00560 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.79□□□□□ -0.2
SDCBPO00560 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 AC004790.2-201ENST00000623588 572 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 AC117500.6-201ENST00000624871 588 ntBASIC13.79□□□□□ -0.2
SDCBPO00560 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SDCBPO00560 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SDCBPO00560 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.79□□□□□ -0.2
SDCBPO00560 AC136621.1-201ENST00000624017 2304 ntBASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms