Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 AL121723.1-201ENST00000445194 1519 ntBASIC12.26□□□□□ -0.45
COL6A5A8TX70 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
COL6A5A8TX70 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
COL6A5A8TX70 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 SNX15-201ENST00000352068 771 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC004987.2-201ENST00000395959 1148 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 KRT18P43-201ENST00000469825 1281 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 SAMD11P1-201ENST00000571429 661 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 MIR4649-201ENST00000582839 64 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC000095.1-201ENST00000603208 874 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 GPAA1P2-202ENST00000606848 1787 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AGER-206ENST00000375070 1463 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 HIST2H2BB-201ENST00000449108 381 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 BUD31-205ENST00000456893 512 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 PTPN20CP-201ENST00000614090 920 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC105137.3-201ENST00000617588 984 ntBASIC12.25□□□□□ -0.45
COL6A5A8TX70 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
COL6A5A8TX70 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 ACTBP7-201ENST00000418351 1124 ntBASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 AC244157.2-201ENST00000616239 1006 ntBASIC12.24□□□□□ -0.45
COL6A5A8TX70 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC12.24□□□□□ -0.45
COL6A5A8TX70 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL6A5A8TX70 KRT8P35-201ENST00000483942 1338 ntBASIC12.24□□□□□ -0.45
COL6A5A8TX70 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms